The reason I like to change the order is that I will load a track from my GPS, then I'll load older GPX files to compare my tracks. It's nice to have a way to put the most recent one back on top, and Scott's method works great for this purpose.
I found that right-clicking on the track in the map window has the great option to "Highllight File in Active List", so finding the file in the list when there are lots of files loaded is plenty easy. No additional programming is needed to add this as a feature as far as I am concerned.
Thanks!