Yes, it's because they are in your map cache. If you would like to go to all new maps you have two options:
1) delete your map cache and start over (good option if you don't have too many maps downloaded)
2) email us at
support@topofusion.com and we'll give you instructions on how to invalidate the old
maps so that TF will download new Topos to replace them
For #1, you just need to delete mapindex.dat and all mapsX.dat (maps0.dat, maps1.dat, etc).
As for 3d profiling, what do you mean? The 3D texture does update with the current profile position now...